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GrainGenes Locus Report: POPA1_0433

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Locus
POPA1_0433  [ Marker Report ]
Type
SNP
Synonym
Other name11_10433
BOPA1_11_10433
BOPA1_3201-603
Synonym11_10433
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H87
Hordeum-OPA-2009-1H93.95
Hordeum-OPA123-2008-1H93.95
Hordeum-OPAConsensus-2011-1H95.14
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0688P22
Probe
HAR35_15974
i_11_10433
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0433
Marker name in barley OPA1 = 11_10433
Original SNP name = 3201-603
Most representative HarvEST:Barley Assembly #32 Unigene = 3201
Most representative HarvEST:Barley Assembly #35 Unigene = 15974
HarvEST Unigene 35 Probe Set = Contig4508_at
Unigene 35 Rice Locus = LOC_Os05g35740
Description for best rice BLAST hit to Unigene 35 member = Pi starvation-induced protein, putative, expressed; E value = 8E-44
Description for best rice BLAST hit to Unigene 35 member = protein Pi starvation-induced protein, putative, expressed; E value = 8E-44
BLAST hit in the rice genome = Pi starvation-induced protein, putative, expressed

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