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GrainGenes Locus Report: POPA1_0494

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Locus
POPA1_0494  [ Marker Report ]
Type
SNP
Synonym
Other name11_10494
BOPA1_11_10494
BOPA1_3580-331
Synonym11_10494
Chromosome
6H
Chromosome Arm
6HS
Map
Barley, 2012 9KSNP 6H44.1
Hordeum-OPA-2009-6H42.36
Hordeum-OPA123-2008-6H42.36
Hordeum-OPAConsensus-2011-6H44.96
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0547J18
Probe
HAR35_16003
i_11_10494
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0494
Marker name in barley OPA1 = 11_10494
Original SNP name = 3580-331
Most representative HarvEST:Barley Assembly #32 Unigene = 3580
Most representative HarvEST:Barley Assembly #35 Unigene = 16003
HarvEST Unigene 35 Probe Set = Contig5026_at; Contig5028_s_at
Unigene 35 Rice Locus = LOC_Os02g37060
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 7E-23
HarvEST Unigene 35 Probe Set = Contig5026_at, Contig5028_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 7E-23
BLAST hit in the rice genome = expressed protein