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GrainGenes Locus Report: POPA1_0550

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Locus
POPA1_0550  [ Marker Report ]
Type
SNP
Synonym
Other name11_10550
BOPA1_11_10550
BOPA1_382-2624
Synonym11_10550
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H143.68
Hordeum-OPA123-2008-7H143.68
Hordeum-OPAConsensus-2011-7H142.46
Hordeum-OWB-OPA2008-7H163.886
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0779E21
Probe
HAR35_534
i_11_10550
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0550
Marker name in barley OPA1 = 11_10550
Original SNP name = 382-2624
Most representative HarvEST:Barley Assembly #32 Unigene = 382
Most representative HarvEST:Barley Assembly #35 Unigene = 534
HarvEST Unigene 35 Probe Set = Contig385_s_at
Unigene 35 Rice Locus = LOC_Os02g09150
Description for best rice BLAST hit to Unigene 35 member = pyrophosphate-energized vacuolar membrane proton pump, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein pyrophosphate-energized vacuolar membrane proton pump, putative, expressed; E value = 0
BLAST hit in the rice genome = pyrophosphate-energized vacuolar membrane proton pump, putative, expressed