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GrainGenes Locus Report: POPA1_0563

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Locus
POPA1_0563  [ Marker Report ]
Type
SNP
Synonym
Other name11_10563
BOPA1_11_10563
BOPA1_3900-611
Synonym11_10563
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H112.46
Hordeum-OPA123-2008-7H112.46
Hordeum-OPAConsensus-2011-7H112.99
Hordeum-OWB-OPA2008-7H127.937
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0635P04
Probe
HAR35_16686
i_11_10563
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0563
Marker name in barley OPA1 = 11_10563
Original SNP name = 3900-611
Most representative HarvEST:Barley Assembly #32 Unigene = 3900
Most representative HarvEST:Barley Assembly #35 Unigene = 16686
HarvEST Unigene 35 Probe Set = Contig5475_at; Contig5475_s_at
Unigene 35 Rice Locus = LOC_Os05g06780
Description for best rice BLAST hit to Unigene 35 member = lipid binding protein, putative, expressed; E value = 3E-48
HarvEST Unigene 35 Probe Set = Contig5475_at, Contig5475_s_at
Description for best rice BLAST hit to Unigene 35 member = protein lipid binding protein, putative, expressed; E value = 3E-48
BLAST hit in the rice genome = lipid binding protein, putative, expressed