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GrainGenes Locus Report: POPA1_0621

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0621  [ Marker Report ]
Type
SNP
Probe
HAR35_14205
i_11_10621
Synonym
Other name11_10621
BOPA1_11_10621
BOPA1_421-528
Synonym11_10621
Chromosome
5H
Chromosome Arm
5HS
Map
Barley, 2012 9KSNP 5H31.7
Hordeum-OPA-2009-5H37.11
Hordeum-OPA123-2008-5H37.11
Hordeum-OPAConsensus-2011-5H31.2
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0621
Marker name in barley OPA1 = 11_10621
Original SNP name = 421-528
Most representative HarvEST:Barley Assembly #32 Unigene = 421
Most representative HarvEST:Barley Assembly #35 Unigene = 14205
HarvEST Unigene 35 Probe Set = Contig278_at
Unigene 35 Rice Locus = LOC_Os11g10480
Description for best rice BLAST hit to Unigene 35 member = alcohol dehydrogenase 1, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein alcohol dehydrogenase 1, putative, expressed; E value = 0
BLAST hit in the rice genome = alcohol dehydrogenase 1, putative, expressed

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