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GrainGenes Locus Report: POPA1_0636

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Locus
POPA1_0636  [ Marker Report ]
Type
SNP
Synonym
Other name12_10636
BOPA2_12_10636
Synonym12_10636
Chromosome
1H
Chromosome Arm
1HS
Map
Barley, 2012 9KSNP 1H5
Hordeum-OPA-2009-1H4.51
Hordeum-OPA123-2008-1H4.51
Hordeum-OPAConsensus-2011-1H5.41
Hordeum-OWB-OPA2008-1H8.949
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0668P06
Probe
HAR35_16297
i_12_10636
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0636
Marker name in barley OPA1 = 12_10636
Original SNP name = 4314-1463
Most representative HarvEST:Barley Assembly #32 Unigene = 4314
Most representative HarvEST:Barley Assembly #35 Unigene = 16297
HarvEST Unigene 35 Probe Set = Contig5994_at; Contig5994_s_at
Unigene 35 Rice Locus = LOC_Os04g01690
Description for best rice BLAST hit to Unigene 35 member = arginine decarboxylase, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_10636
HarvEST Unigene 35 Probe Set = Contig5994_at, Contig5994_s_at
Description for best rice BLAST hit to Unigene 35 member = protein arginine decarboxylase, putative, expressed; E value = 0
BLAST hit in the rice genome = arginine decarboxylase, putative, expressed