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GrainGenes Locus Report: POPA1_0667

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Locus
POPA1_0667  [ Marker Report ]
Type
SNP
Synonym
Other name11_10667
BOPA1_11_10667
BOPA1_454-1502
Synonym11_10667
Chromosome
4H
Chromosome Arm
4HS
Map
Barley, 2012 9KSNP 4H51
Hordeum-OPA-2009-4H48.5
Hordeum-OPA123-2008-4H48.5
Hordeum-OPAConsensus-2011-4H54.73
Hordeum-OWB-OPA2008-4H52.267
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0686F03
Probe
HAR35_14571
i_11_10667
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0667
Marker name in barley OPA1 = 11_10667
Original SNP name = 454-1502
Most representative HarvEST:Barley Assembly #32 Unigene = 454
Most representative HarvEST:Barley Assembly #35 Unigene = 14571
HarvEST Unigene 35 Probe Set = Contig70_x_at; Contig725_s_at
Unigene 35 Rice Locus = LOC_Os11g09280
HarvEST Unigene 35 Probe Set = Contig70_x_at, Contig725_s_at
Description for best rice BLAST hit to Unigene 35 member = protein OsPDIL1-1 - Oryza sativa protein disulfide isomerase, expressed; E value = 0
BLAST hit in the rice genome = OsPDIL1-1 - Oryza sativa protein disulfide isomerase, expressed