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GrainGenes Locus Report: POPA1_0691

[Submit comment/correction] [What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0691  [ Marker Report ]
Type
SNP
Probe
HAR35_2635
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H29.6
Hordeum-OPA-2009-3H26.9
Hordeum-OPA123-2008-3H26.9
Hordeum-OPAConsensus-2011-3H28.02
Hordeum-OWB-OPA2008-3H29.641
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0263F20
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 1_0691
Most representative HarvEST:Barley Assembly #32 Unigene = 4701
Most representative HarvEST:Barley Assembly #35 Unigene = 2635
HarvEST Unigene 35 Probe Set = Contig6574_at
Unigene 35 Rice Locus = LOC_Os01g04950
Description for best rice BLAST hit to Unigene 35 member = peptide transporter PTR2, putative, expressed; E value = 0
Original SNP name = 4701-2008
Description for best rice BLAST hit to Unigene 35 member = protein peptide transporter PTR2, putative, expressed; E value = 0
BLAST hit in the rice genome = peptide transporter PTR2, putative, expressed

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