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GrainGenes Locus Report: POPA1_0726

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Locus
POPA1_0726  [ Marker Report ]
Type
SNP
Synonym
Other name11_10726
BOPA1_11_10726
BOPA1_5028-1261
Synonym11_10726
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H50.8
Hordeum-OPA-2009-7H56.81
Hordeum-OPA123-2008-7H56.81
Hordeum-OPAConsensus-2011-7H51.23
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0598K19
Probe
HAR35_2923
i_11_10726
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0726
Marker name in barley OPA1 = 11_10726
Original SNP name = 5028-1261
Most representative HarvEST:Barley Assembly #32 Unigene = 5028
Most representative HarvEST:Barley Assembly #35 Unigene = 2923
HarvEST Unigene 35 Probe Set = Contig6984_at; Contig6984_s_at; HVSMEb0004N24r2_at
Unigene 35 Rice Locus = LOC_Os06g08840
Description for best rice BLAST hit to Unigene 35 member = splicing factor, arginine/serine-rich 7, putative, expressed; E value = 5E-89
HarvEST Unigene 35 Probe Set = Contig6984_at, Contig6984_s_at, HVSMEb0004N24r2_at
Description for best rice BLAST hit to Unigene 35 member = protein splicing factor, arginine/serine-rich 7, putative, expressed; E value = 5E-89
BLAST hit in the rice genome = splicing factor, arginine/serine-rich 7, putative, expressed

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