Query (optional)   in Class  

GrainGenes Locus Report: POPA1_0769

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0769  [ Marker Report ]
Type
SNP
Probe
HAR35_3096
i_12_10769
Synonym
Other name12_10769
BOPA2_12_10769
Synonym12_10769
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H172.38
Hordeum-OPA123-2008-5H172.38
Hordeum-OPAConsensus-2011-5H163.72
Hordeum-OWB-OPA2008-5H217.103
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0769
Marker name in barley OPA1 = 12_10769
Original SNP name = 5413-2541
Most representative HarvEST:Barley Assembly #32 Unigene = 5413
Most representative HarvEST:Barley Assembly #35 Unigene = 3096
HarvEST Unigene 35 Probe Set = Contig7241_at
Unigene 35 Rice Locus = LOC_Os03g61220
Description for best rice BLAST hit to Unigene 35 member = nucleolar RNA helicase 2, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_10769
Description for best rice BLAST hit to Unigene 35 member = protein nucleolar RNA helicase 2, putative, expressed; E value = 0
BLAST hit in the rice genome = nucleolar RNA helicase 2, putative, expressed

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.