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GrainGenes Locus Report: POPA1_0778

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_0778  [ Marker Report ]
Type
SNP
Probe
HAR35_141
i_11_10778
Synonym
Other name11_10778
BOPA1_11_10778
BOPA1_552-188
Synonym11_10778
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H155.6
Hordeum-OPA-2009-5H175.9
Hordeum-OPA123-2008-5H175.9
Hordeum-OPAConsensus-2011-5H166.65
Hordeum-OWB-OPA2008-5H221.476
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0778
Marker name in barley OPA1 = 11_10778
Original SNP name = 552-188
Most representative HarvEST:Barley Assembly #32 Unigene = 552
Most representative HarvEST:Barley Assembly #35 Unigene = 141
HarvEST Unigene 35 Probe Set = Contig827_x_at; Contig901_x_at
Unigene 35 Rice Locus = LOC_Os02g32030
Description for best rice BLAST hit to Unigene 35 member = elongation factor 2, putative, expressed; E value = 1E-124
HarvEST Unigene 35 Probe Set = Contig827_x_at, Contig901_x_at
Description for best rice BLAST hit to Unigene 35 member = protein elongation factor 2, putative, expressed; E value = 1E-124
BLAST hit in the rice genome = elongation factor 2, putative, expressed

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