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GrainGenes Locus Report: POPA1_0780

Locus
POPA1_0780  [ Marker Report ]
Type
SNP
Synonym
Other name11_10780
BOPA1_11_10780
BOPA1_5541-418
Synonym11_10780
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H119.05
Hordeum-OPA123-2008-2H119.05
Hordeum-OPAConsensus-2011-2H137.03
Hordeum-OWB-OPA2008-2H142.527
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0611I21
Probe
HAR35_3326
i_11_10780
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0780
Marker name in barley OPA1 = 11_10780
Original SNP name = 5541-418
Most representative HarvEST:Barley Assembly #32 Unigene = 5541
Most representative HarvEST:Barley Assembly #35 Unigene = 3326
HarvEST Unigene 35 Probe Set = Contig7530_s_at
Unigene 35 Rice Locus = LOC_Os04g53490
Description for best rice BLAST hit to Unigene 35 member = OsCHL - Oryza sativa Chloroplastic lipocalin, expressed; E value = 1E-152
Description for best rice BLAST hit to Unigene 35 member = protein OsCHL - Oryza sativa Chloroplastic lipocalin, expressed; E value = 1E-152
BLAST hit in the rice genome = OsCHL - Oryza sativa Chloroplastic lipocalin, expressed