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GrainGenes Locus Report: POPA1_0793

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Locus
POPA1_0793  [ Marker Report ]
Type
SNP
Synonym
Other name11_10793
BOPA1_11_10793
BOPA1_5726-414
Synonym11_10793
Chromosome
4H
Chromosome Arm
4HS
Map
Hordeum-OPA-2009-4H44.94
Hordeum-OPA123-2008-4H44.94
Hordeum-OPAConsensus-2011-4H50.22
Hordeum-OWB-OPA2008-4H46.734
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0487G15
Probe
HAR35_17611
i_11_10793
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0793
Marker name in barley OPA1 = 11_10793
Original SNP name = 5726-414
Most representative HarvEST:Barley Assembly #32 Unigene = 5726
Most representative HarvEST:Barley Assembly #35 Unigene = 17611
HarvEST Unigene 35 Probe Set = Contig7787_at; HVSMEi0007G06r2_s_at
Unigene 35 Rice Locus = LOC_Os03g41060
Description for best rice BLAST hit to Unigene 35 member = gibberellin-regulated protein 1 precursor, putative, expressed; E value = 9E-33
HarvEST Unigene 35 Probe Set = Contig7787_at, HVSMEi0007G06r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein gibberellin-regulated protein 1 precursor, putative, expressed; E value = 9E-33
BLAST hit in the rice genome = gibberellin-regulated protein 1 precursor, putative, expressed