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GrainGenes Locus Report: POPA1_0808

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Locus
POPA1_0808  [ Marker Report ]
Type
SNP
Synonym
Other name12_10808
BOPA2_12_10808
Synonym12_10808
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H127.38
Hordeum-OPA123-2008-1H127.38
Hordeum-OPAConsensus-2011-1H129.71
Hordeum-OWB-OPA2008-1H142.047
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_17553
i_12_10808
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0808
Marker name in barley OPA1 = 12_10808
Original SNP name = 5878-1810
Most representative HarvEST:Barley Assembly #32 Unigene = 5878
Most representative HarvEST:Barley Assembly #35 Unigene = 17553
HarvEST Unigene 35 Probe Set = Contig8398_at
Unigene 35 Rice Locus = LOC_Os05g49150
Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 3 subunit 7, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_10808
Original SNP name = U35_3467_405
Description for best rice BLAST hit to Unigene 35 member = protein eukaryotic translation initiation factor 3 subunit 7, putative, expressed; E value = 0
BLAST hit in the rice genome = eukaryotic translation initiation factor 3 subunit 7, putative, expressed