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GrainGenes Locus Report: POPA1_0847

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Locus
POPA1_0847  [ Marker Report ]
Type
SNP
Synonym
Other name12_10847
BOPA2_12_10847
Synonym12_10847
CDO38
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H33.73
Hordeum-OPA123-2008-2H33.73
Hordeum-OPAConsensus-2011-2H34.24
Hordeum-OWB-OPA2008-2H53.015
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0352A04
Probe
HAR35_17092
i_12_10847
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0847
Marker name in barley OPA1 = 12_10847
Original SNP name = 6471-1139
Most representative HarvEST:Barley Assembly #32 Unigene = 6471
Most representative HarvEST:Barley Assembly #35 Unigene = 17092
HarvEST Unigene 35 Probe Set = Contig8505_s_at
Unigene 35 Rice Locus = LOC_Os07g48430
Description for best rice BLAST hit to Unigene 35 member = nucleoside-triphosphatase, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_10847
Description for best rice BLAST hit to Unigene 35 member = protein nucleoside-triphosphatase, putative, expressed; E value = 0
BLAST hit in the rice genome = nucleoside-triphosphatase, putative, expressed