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GrainGenes Locus Report: POPA1_0883

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Locus
POPA1_0883  [ Marker Report ]
Type
SNP
Synonym
Other name12_10883
BOPA2_12_10883
Synonym12_10883
CDO370
Chromosome
2H
Chromosome Arm
2HO
Map
Hordeum-OPA-2009-2H59.21
Hordeum-OPA123-2008-2H59.21
Hordeum-OPAConsensus-2011-2H69.05
Hordeum-OWB-OPA2008-2H72.752
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0537G08
Probe
HAR35_14504
i_12_10883
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0883
Marker name in barley OPA1 = 12_10883
Original SNP name = 697-715
Most representative HarvEST:Barley Assembly #32 Unigene = 697
Most representative HarvEST:Barley Assembly #35 Unigene = 14504
HarvEST Unigene 35 Probe Set = Contig1024_at; EBed02_SQ003_C14_s_at
Unigene 35 Rice Locus = LOC_Os04g28180
Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S8, putative, expressed; E value = 1E-112
Marker name in barley OPA2 = 12_10883
HarvEST Unigene 35 Probe Set = Contig1024_at, EBed02_SQ003_C14_s_at
Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S8, putative, expressed; E value = 1E-112
BLAST hit in the rice genome = 40S ribosomal protein S8, putative, expressed