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GrainGenes Locus Report: POPA1_0890

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Locus
POPA1_0890  [ Marker Report ]
Type
SNP
Synonym
Other name11_10890
BOPA1_11_10890
BOPA1_713-972
Synonym11_10890
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H73.94
Hordeum-OPA123-2008-1H73.94
Hordeum-OPAConsensus-2011-1H76.92
Hordeum-OWB-OPA2008-1H82.961
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0814K22
Probe
HAR35_13916
i_11_10890
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0890
Marker name in barley OPA1 = 11_10890
Original SNP name = 713-972
Most representative HarvEST:Barley Assembly #32 Unigene = 713
Most representative HarvEST:Barley Assembly #35 Unigene = 13916
HarvEST Unigene 35 Probe Set = Contig1008_x_at; rbaal31p03_s_at
Unigene 35 Rice Locus = LOC_Os05g41060
Description for best rice BLAST hit to Unigene 35 member = ADP-ribosylation factor, putative, expressed; E value = 1E-101
HarvEST Unigene 35 Probe Set = Contig1008_x_at, rbaal31p03_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ADP-ribosylation factor, putative, expressed; E value = 1E-101
BLAST hit in the rice genome = ADP-ribosylation factor, putative, expressed