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GrainGenes Locus Report: POPA1_0911

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Locus
POPA1_0911  [ Marker Report ]
Type
SNP
Synonym
Other name11_10911
BOPA1_11_10911
BOPA1_7527-1618
Synonym11_10911
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H120.51
Hordeum-OPA123-2008-1H120.51
Hordeum-OPAConsensus-2011-1H121.8
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0781H19
Probe
HAR35_4245
i_11_10911
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0911
Marker name in barley OPA1 = 11_10911
Original SNP name = 7527-1618
Most representative HarvEST:Barley Assembly #32 Unigene = 7527
Most representative HarvEST:Barley Assembly #35 Unigene = 4245
HarvEST Unigene 35 Probe Set = Contig10050_s_at; Contig10051_at
Unigene 35 Rice Locus = LOC_Os05g48422
Description for best rice BLAST hit to Unigene 35 member = structural constituent of ribosome, putative, expressed; E value = 1E-136
HarvEST Unigene 35 Probe Set = Contig10050_s_at, Contig10051_at
Description for best rice BLAST hit to Unigene 35 member = protein structural constituent of ribosome, putative, expressed; E value = 1E-136
BLAST hit in the rice genome = structural constituent of ribosome, putative, expressed