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GrainGenes Locus Report: POPA1_0970

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Locus
POPA1_0970  [ Marker Report ]
Type
SNP
Synonym
Synonym12_10970
Chromosome
2H
Chromosome Arm
2HS
Map
Hordeum-OPA-2009-2H0
Hordeum-OPA123-2008-2H0
Hordeum-OPAConsensus-2011-2H0
Hordeum-OWB-OPA2008-2H1.12
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0387D19
Probe
HAR35_14707
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0970
Marker name in barley OPA1 = 12_10970
Original SNP name = 842-1286
Most representative HarvEST:Barley Assembly #32 Unigene = 842
Most representative HarvEST:Barley Assembly #35 Unigene = 14707
HarvEST Unigene 35 Probe Set = HW07D08u_s_at
Unigene 35 Rice Locus = LOC_Os04g08350
Description for best rice BLAST hit to Unigene 35 member = cysteine synthase, chloroplast precursor, putative, expressed; E value = 1E-175
Marker name in barley OPA2 = 12_10970
Description for best rice BLAST hit to Unigene 35 member = protein cysteine synthase, chloroplast precursor, putative, expressed; E value = 1E-175
BLAST hit in the rice genome = cysteine synthase, chloroplast precursor, putative, expressed