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GrainGenes Locus Report: POPA1_1029

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Locus
POPA1_1029  [ Marker Report ]
Type
SNP
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Core-2014_7H80.65
Hordeum-OPA-2009-7H80.94
Hordeum-OPA123-2008-7H80.94
Hordeum-OPAConsensus-2011-7H83.42
Hordeum-OWB-OPA2008-7H87.36
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0393E14
Probe
HAR35_14361
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1029
Most representative HarvEST:Barley Assembly #32 Unigene = 982
Most representative HarvEST:Barley Assembly #35 Unigene = 14361
HarvEST Unigene 35 Probe Set = Contig1446_s_at; HVSMEg0013I19r2_s_at
Unigene 35 Rice Locus = LOC_Os06g35030
Description for best rice BLAST hit to Unigene 35 member = CID11, putative, expressed; E value = 1E-163
Original SNP name = 982-1374
Original SNP name = U32_4893_291
HarvEST Unigene 35 Probe Set = Contig1446_s_at, HVSMEg0013I19r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein CID11, putative, expressed; E value = 1E-163
BLAST hit in the rice genome = CID11, putative, expressed