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GrainGenes Locus Report: POPA1_1135

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Locus
POPA1_1135  [ Marker Report ]
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H67.39
Hordeum-OPA-2009-5H89.38
Hordeum-OPA123-2008-5H89.38
Hordeum-OPAConsensus-2011-5H78.19
Hordeum-OWB-OPA2008-5H102.68
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0419E10
Probe
HAR35_16603
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 8 ]
Marker name in barley Pilot OPA1 = 1_1135
Most representative HarvEST:Barley Assembly #32 Unigene = 4344
Most representative HarvEST:Barley Assembly #35 Unigene = 16603
HarvEST Unigene 35 Probe Set = Contig6144_at
Unigene 35 Rice Locus = LOC_Os09g29070
Original SNP name = ABC06144-pHv86-02
Description for best rice BLAST hit to Unigene 35 member = protein glucose-6-phosphate isomerase, putative, expressed; E value = 0
BLAST hit in the rice genome = glucose-6-phosphate isomerase, putative, expressed