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GrainGenes Locus Report: POPA1_1171

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Locus
POPA1_1171  [ Marker Report ]
Type
SNP
Synonym
Other name12_11171
BOPA2_12_11171
Synonym12_11171
Chromosome
6H
Chromosome Arm
6HS
Map
Hordeum-OPA-2009-6H50.07
Hordeum-OPA123-2008-6H50.07
Hordeum-OPAConsensus-2011-6H53.54
Hordeum-OWB-OPA2008-6H61.96
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0324B17
Probe
HAR35_986
i_12_11171
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1171
Marker name in barley OPA1 = 12_11171
Original SNP name = ABC07448-1-1-309
Most representative HarvEST:Barley Assembly #32 Unigene = 5487
Most representative HarvEST:Barley Assembly #35 Unigene = 986
HarvEST Unigene 35 Probe Set = Contig7448_at; Contig7448_s_at
Unigene 35 Rice Locus = LOC_Os10g38495
Marker name in barley OPA2 = 12_11171
Original SNP name = U32_9299_278
HarvEST Unigene 35 Probe Set = Contig7448_at, Contig7448_s_at
Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase GSTU6, putative, expressed; E value = 4E-88
BLAST hit in the rice genome = glutathione S-transferase GSTU6, putative, expressed