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GrainGenes Locus Report: POPA1_1204

Locus
POPA1_1204  [ Marker Report ]
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H43.92
Hordeum-OPA-2009-5H52.6
Hordeum-OPA123-2008-5H52.6
Hordeum-OPAConsensus-2011-5H43.15
Hordeum-OWB-OPA2008-5H59.437
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0746B04
Probe
HAR35_3324
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 8 ]
Marker name in barley Pilot OPA1 = 1_1204
Most representative HarvEST:Barley Assembly #32 Unigene = 6174
Most representative HarvEST:Barley Assembly #35 Unigene = 3324
HarvEST Unigene 35 Probe Set = Contig8641_at
Unigene 35 Rice Locus = LOC_Os12g02820
Original SNP name = ABC08641-1-2-470
Description for best rice BLAST hit to Unigene 35 member = protein ethanolamine-phosphate cytidylyltransferase, putative, expressed; E value = 0
BLAST hit in the rice genome = ethanolamine-phosphate cytidylyltransferase, putative, expressed