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GrainGenes Locus Report: POPA1_1205

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Locus
POPA1_1205  [ Marker Report ]
Type
SNP
Synonym
Other name11_11205
BOPA1_11_11205
BOPA1_ABC08769-1-1-205
Synonym11_11205
Chromosome
6H
Chromosome Arm
6HS
Map
Barley, 2012 9KSNP 6H50.8
Hordeum-OPA-2009-6H50.07
Hordeum-OPA123-2008-6H50.07
Hordeum-OPAConsensus-2011-6H53.54
Hordeum-OWB-OPA2008-6H61.96
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0171D19
Probe
HAR35_17939
i_11_11205
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1205
Marker name in barley OPA1 = 11_11205
Original SNP name = ABC08769-1-1-205
Most representative HarvEST:Barley Assembly #32 Unigene = 6822
Most representative HarvEST:Barley Assembly #35 Unigene = 17939
HarvEST Unigene 35 Probe Set = Contig8769_at
Unigene 35 Rice Locus = LOC_Os02g06370
Description for best rice BLAST hit to Unigene 35 member = DNA binding protein, putative, expressed; E value = 1E-105
Description for best rice BLAST hit to Unigene 35 member = protein DNA binding protein, putative, expressed; E value = 1E-105
BLAST hit in the rice genome = DNA binding protein, putative, expressed