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GrainGenes Locus Report: POPA1_1216

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Locus
POPA1_1216  [ Marker Report ]
Type
SNP
Synonym
Synonym11_11216
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H171.66
Hordeum-OPA123-2008-5H171.66
Hordeum-OPAConsensus-2011-5H162.98
Hordeum-OWB-OPA2008-5H216.016
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0385J23
Probe
HAR35_18220
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1216
Marker name in barley OPA1 = 11_11216
Original SNP name = ABC09278-1-4-69
Most representative HarvEST:Barley Assembly #32 Unigene = 6900
Most representative HarvEST:Barley Assembly #35 Unigene = 18220
HarvEST Unigene 35 Probe Set = Contig9278_at; Contig9278_s_at
Unigene 35 Rice Locus = LOC_Os01g21630
Description for best rice BLAST hit to Unigene 35 member = carboxylic ester hydrolase, putative, expressed; E value = 1E-148
Original SNP name = U32_4897_828
HarvEST Unigene 35 Probe Set = Contig9278_at, Contig9278_s_at
Description for best rice BLAST hit to Unigene 35 member = protein carboxylic ester hydrolase, putative, expressed; E value = 1E-148
BLAST hit in the rice genome = carboxylic ester hydrolase, putative, expressed