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GrainGenes Locus Report: POPA1_1232

Locus
POPA1_1232  [ Marker Report ]
Type
SNP
Synonym
Other name12_11232
BOPA2_12_11232
Synonym12_11232
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H55.63
Hordeum-OPA123-2008-4H55.63
Hordeum-OPAConsensus-2011-4H61.56
Hordeum-OWB-OPA2008-4H54.441
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_16206
i_12_11232
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1232
Marker name in barley OPA1 = 12_11232
Original SNP name = ABC09808-1-1-298
Most representative HarvEST:Barley Assembly #32 Unigene = 7347
Most representative HarvEST:Barley Assembly #35 Unigene = 16206
HarvEST Unigene 35 Probe Set = Contig9808_at
Unigene 35 Rice Locus = LOC_Os03g17790
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 7E-21
Marker name in barley OPA2 = 12_11232
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 7E-21
BLAST hit in the rice genome = expressed protein