Query (optional)   in Class  

GrainGenes Locus Report: POPA1_1279

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA1_1279  [ Marker Report ]
Type
SNP
Synonym
Synonym12_11279
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H128.36
Hordeum-OPA123-2008-7H128.36
Hordeum-OPAConsensus-2011-7H129.32
Hordeum-OWB-OPA2008-7H145.937
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_4274
Reference
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_1279
Marker name in barley OPA1 = 12_11279
Original SNP name = ABC11401-2-3-127
Most representative HarvEST:Barley Assembly #32 Unigene = 8642
Most representative HarvEST:Barley Assembly #35 Unigene = 4274
HarvEST Unigene 35 Probe Set = Contig11401_at; Contig11402_s_at
Unigene 35 Rice Locus = LOC_Os06g45140
Description for best rice BLAST hit to Unigene 35 member = light-inducible protein CPRF-2, putative, expressed; E value = 2E-60
Marker name in barley OPA2 = 12_11279
HarvEST Unigene 35 Probe Set = Contig11401_at, Contig11402_s_at
Description for best rice BLAST hit to Unigene 35 member = protein light-inducible protein CPRF-2, putative, expressed; E value = 2E-60
BLAST hit in the rice genome = light-inducible protein CPRF-2, putative, expressed