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GrainGenes Locus Report: POPA1_1288

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Locus
POPA1_1288  [ Marker Report ]
Type
SNP
Synonym
Other name12_11288
BOPA2_12_11288
Synonym12_11288
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H59.9
Hordeum-OPA123-2008-2H59.9
Hordeum-OPAConsensus-2011-2H67.08
Hordeum-OWB-OPA2008-2H72.752
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0318J08
Probe
HAR35_5841
i_12_11288
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1288
Marker name in barley OPA1 = 12_11288
Original SNP name = ABC11935-sfp60
Most representative HarvEST:Barley Assembly #32 Unigene = 9257
Most representative HarvEST:Barley Assembly #35 Unigene = 5841
HarvEST Unigene 35 Probe Set = Contig11935_at
Unigene 35 Rice Locus = LOC_Os07g02440
Description for best rice BLAST hit to Unigene 35 member = peroxidase 50 precursor, putative, expressed; E value = 1E-139
Marker name in barley OPA2 = 12_11288
Original SNP name = U35_20782_165
Description for best rice BLAST hit to Unigene 35 member = protein peroxidase 50 precursor, putative, expressed; E value = 1E-139
BLAST hit in the rice genome = peroxidase 50 precursor, putative, expressed