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GrainGenes Locus Report: POPA1_1307

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Locus
POPA1_1307  [ Marker Report ]
Type
SNP
Synonym
Other name11_11307
BOPA1_11_11307
BOPA1_ABC12856-1-1-77
Synonym11_11307
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H91
Hordeum-OPA-2009-2H96.82
Hordeum-OPA123-2008-2H96.82
Hordeum-OPAConsensus-2011-2H109.29
Hordeum-OWB-OPA2008-2H114.573
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0686M14
Probe
HAR35_4864
i_11_11307
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 9 ]
Marker name in barley Pilot OPA1 = 1_1307
Marker name in barley OPA1 = 11_11307
Original SNP name = ABC12856-1-1-77
Most representative HarvEST:Barley Assembly #32 Unigene = 9192
Most representative HarvEST:Barley Assembly #35 Unigene = 4864
HarvEST Unigene 35 Probe Set = Contig12856_at
Unigene 35 Rice Locus = LOC_Os04g46750
Description for best rice BLAST hit to Unigene 35 member = protein transferase, transferring glycosyl groups, putative, expressed; E value = 0
BLAST hit in the rice genome = transferase, transferring glycosyl groups, putative, expressed