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GrainGenes Locus Report: POPA1_1320

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Locus
POPA1_1320  [ Marker Report ]
Type
SNP
Synonym
Other name11_11320
BOPA1_11_11320
BOPA1_ABC13480-1-7-313
Synonym11_11320
Chromosome
1H
3H
Chromosome Arm
3HL
Map
Hordeum-OWB-OPA2008-1H153.013
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0269K01
Probe
HAR35_19636
i_11_11320
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Remark
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Marker name in barley Pilot OPA1 = 1_1320
Marker name in barley OPA1 = 11_11320
Original SNP name = ABC13480-1-7-313
Most representative HarvEST:Barley Assembly #32 Unigene = 10515
Most representative HarvEST:Barley Assembly #35 Unigene = 19636
HarvEST Unigene 35 Probe Set = Contig13480_at
Unigene 35 Rice Locus = LOC_Os01g74020
Description for best rice BLAST hit to Unigene 35 member = ARR1 protein-like, putative, expressed; E value = 3E-50
BLAST hit in the rice genome = ARR1 protein-like, putative, expressed