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GrainGenes Locus Report: POPA1_1336

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Locus
POPA1_1336  [ Marker Report ]
Type
SNP
Synonym
Other name11_11336
BOPA1_11_11336
BOPA1_ABC14148-1-1-177
Synonym11_11336
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H50.6
Hordeum-OPA123-2008-1H50.6
Hordeum-OPAConsensus-2011-1H42.42
Hordeum-OWB-OPA2008-1H57.714
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0227E02
Probe
HAR35_4935
i_11_11336
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1336
Marker name in barley OPA1 = 11_11336
Original SNP name = ABC14148-1-1-177
Most representative HarvEST:Barley Assembly #32 Unigene = 9882
Most representative HarvEST:Barley Assembly #35 Unigene = 4935
HarvEST Unigene 35 Probe Set = Contig14148_at
Unigene 35 Rice Locus = LOC_Os10g31830
Description for best rice BLAST hit to Unigene 35 member = ras-related protein Rab-18, putative, expressed; E value = 1E-102
Description for best rice BLAST hit to Unigene 35 member = protein ras-related protein Rab-18, putative, expressed; E value = 1E-102
BLAST hit in the rice genome = ras-related protein Rab-18, putative, expressed