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GrainGenes Locus Report: POPA1_1367

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Locus
POPA1_1367  [ Marker Report ]
Type
SNP
Synonym
Other name11_11367
BOPA1_11_11367
BOPA1_ABC16273-1-1-48
Synonym11_11367
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H61.8
Hordeum-OPA-2009-1H66.7
Hordeum-OPA123-2008-1H66.7
Hordeum-OPAConsensus-2011-1H64.44
Hordeum-OWB-OPA2008-1H76.415
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_19320
i_11_11367
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1367
Marker name in barley OPA1 = 11_11367
Original SNP name = ABC16273-1-1-48
Most representative HarvEST:Barley Assembly #32 Unigene = 13202
Most representative HarvEST:Barley Assembly #35 Unigene = 19320
HarvEST Unigene 35 Probe Set = Contig16273_at
Unigene 35 Rice Locus = LOC_Os05g34550
Description for best rice BLAST hit to Unigene 35 member = MLO-like protein 1, putative, expressed; E value = 0
Description for best rice BLAST hit to Unigene 35 member = protein MLO-like protein 1, putative, expressed; E value = 0
BLAST hit in the rice genome = MLO-like protein 1, putative, expressed