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GrainGenes Locus Report: POPA1_1387

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Locus
POPA1_1387  [ Marker Report ]
Type
SNP
Synonym
Other name12_11387
BOPA2_12_11387
Synonym12_11387
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H50.96
Hordeum-OPA123-2008-3H50.96
Hordeum-OPAConsensus-2011-3H60.58
Hordeum-OWB-OPA2008-3H57.492
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0236L09
Probe
HAR35_21506
i_12_11387
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1387
Marker name in barley OPA1 = 12_11387
Original SNP name = ABC18178-1-1-283
Most representative HarvEST:Barley Assembly #32 Unigene = 14433
Most representative HarvEST:Barley Assembly #35 Unigene = 21506
HarvEST Unigene 35 Probe Set = Contig18178_at
Unigene 35 Rice Locus = LOC_Os05g51620
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-69
Marker name in barley OPA2 = 12_11387
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 5E-69
BLAST hit in the rice genome = expressed protein