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GrainGenes Locus Report: POPA1_1402

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_1402  [ Marker Report ]
Type
SNP
Probe
HAR35_9836
i_11_11402
Synonym
Other name11_11402
BOPA1_11_11402
BOPA1_ABC22343-1-1-120
Synonym11_11402
Chromosome
2H
Chromosome Arm
2HL
Map
Hordeum-OPA-2009-2H73.75
Hordeum-OPA123-2008-2H73.75
Hordeum-OPAConsensus-2011-2H84.96
Hordeum-OWB-OPA2008-2H88.091
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0239A20
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1402
Marker name in barley OPA1 = 11_11402
Original SNP name = ABC22343-1-1-120
Most representative HarvEST:Barley Assembly #32 Unigene = 19630
Most representative HarvEST:Barley Assembly #35 Unigene = 9836
HarvEST Unigene 35 Probe Set = Contig22343_at
Unigene 35 Rice Locus = LOC_Os04g42310
Description for best rice BLAST hit to Unigene 35 member = K+ channel tetramerisation domain containing protein, expressed; E value = 2E-80
Description for best rice BLAST hit to Unigene 35 member = protein K+ channel tetramerisation domain containing protein, expressed; E value = 2E-80
BLAST hit in the rice genome = K+ channel tetramerisation domain containing protein, expressed

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