Query (optional)   in Class  

GrainGenes Locus Report: POPA1_1431

Locus
POPA1_1431  [ Marker Report ]
Type
SNP
Synonym
Other name11_11431
BOPA1_11_11431
BOPA1_ConsensusGBS0010-2
Synonym11_11431
Chromosome
4H
Chromosome Arm
4HL
Map
Barley, 2012 9KSNP 4H59.8
Hordeum-OPA-2009-4H65.05
Hordeum-OPA123-2008-4H65.05
Hordeum-OPAConsensus-2011-4H76.31
Hordeum-OWB-OPA2008-4H63.31
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0769F13
Probe
HAR35_19446
i_11_11431
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1431
Marker name in barley OPA1 = 11_11431
Original SNP name = ConsensusGBS0010-2
Most representative HarvEST:Barley Assembly #32 Unigene = 8678
Most representative HarvEST:Barley Assembly #35 Unigene = 19446
HarvEST Unigene 35 Probe Set = Contig10767_at
Unigene 35 Rice Locus = LOC_Os03g12730
Description for best rice BLAST hit to Unigene 35 member = receptor protein kinase CLAVATA1 precursor, putative, expressed; E value = 1E-144
Description for best rice BLAST hit to Unigene 35 member = protein receptor protein kinase CLAVATA1 precursor, putative, expressed; E value = 1E-144
BLAST hit in the rice genome = receptor protein kinase CLAVATA1 precursor, putative, expressed