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GrainGenes Locus Report: POPA1_1441

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Locus
POPA1_1441  [ Marker Report ]
Type
SNP
Synonym
Other name11_11441
BOPA1_11_11441
BOPA1_ConsensusGBS0086-5
Synonym11_11441
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H151.36
Hordeum-OPA123-2008-5H151.36
Hordeum-OPAConsensus-2011-5H143.29
Hordeum-OWB-OPA2008-5H179.39
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0287P05
Probe
HAR35_2792
i_11_11441
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1441
Marker name in barley OPA1 = 11_11441
Original SNP name = ConsensusGBS0086-5
Most representative HarvEST:Barley Assembly #32 Unigene = 5054
Most representative HarvEST:Barley Assembly #35 Unigene = 2792
HarvEST Unigene 35 Probe Set = Contig6889_at; Contig6890_at
Unigene 35 Rice Locus = LOC_Os03g57420
Description for best rice BLAST hit to Unigene 35 member = ML domain protein, putative, expressed; E value = 7E-55
Original SNP name = U35_17942_828
HarvEST Unigene 35 Probe Set = Contig6889_at, Contig6890_at
Description for best rice BLAST hit to Unigene 35 member = protein ML domain protein, putative, expressed; E value = 7E-55
BLAST hit in the rice genome = ML domain protein, putative, expressed