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GrainGenes Locus Report: POPA1_1483

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA1_1483  [ Marker Report ]
Type
SNP
Probe
HAR35_1396
i_11_11483
Synonym
Other name11_11483
BOPA1_11_11483
BOPA1_ConsensusGBS0369-1
Synonym11_11483
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H62.7
Hordeum-OPA-2009-6H63.27
Hordeum-OPA123-2008-6H63.27
Hordeum-OPAConsensus-2011-6H70.5
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_1483
Marker name in barley OPA1 = 11_11483
Original SNP name = ConsensusGBS0369-1
Most representative HarvEST:Barley Assembly #32 Unigene = 2999
Most representative HarvEST:Barley Assembly #35 Unigene = 1396
HarvEST Unigene 35 Probe Set = HVSMEb0005E07r2_s_at
Unigene 35 Rice Locus = LOC_Os02g46610
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-126
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-126
BLAST hit in the rice genome = expressed protein

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