Query (optional)   in Class  

GrainGenes Locus Report: POPA1_1500

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA1_1500  [ Marker Report ]
Type
SNP
Synonym
Other name11_11500
BOPA1_11_11500
BOPA1_ConsensusGBS0461-3
Synonym11_11500
Chromosome
4H
Chromosome Arm
4HL
Map
Hordeum-OPA-2009-4H79.58
Hordeum-OPA123-2008-4H79.58
Hordeum-OPAConsensus-2011-4H89.36
Hordeum-OWB-OPA2008-4H80.974
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0306C15
Probe
HAR35_15225
i_11_11500
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_1500
Marker name in barley OPA1 = 11_11500
Original SNP name = ConsensusGBS0461-3
Most representative HarvEST:Barley Assembly #32 Unigene = 2194
Most representative HarvEST:Barley Assembly #35 Unigene = 15225
HarvEST Unigene 35 Probe Set = Contig3204_at; Contig3205_s_at; HVSMEh0095L04f_s_at
Unigene 35 Rice Locus = LOC_Os03g06620
Description for best rice BLAST hit to Unigene 35 member = 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2, putative, expressed; E value = 1E-112
HarvEST Unigene 35 Probe Set = Contig3204_at, Contig3205_s_at, HVSMEh0095L04f_s_at
Description for best rice BLAST hit to Unigene 35 member = protein 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2, putative, expressed; E value = 1E-112
BLAST hit in the rice genome = 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2, putative, expressed