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GrainGenes Locus Report: POPA1_1513

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Locus
POPA1_1513  [ Marker Report ]
Type
SNP
Synonym
Other name11_11513
BOPA1_11_11513
BOPA1_ConsensusGBS0589-1
Synonym11_11513
Chromosome
4H
Chromosome Arm
4HL
Map
Barley, 2012 9KSNP 4H67
Hordeum-OPA-2009-4H69.51
Hordeum-OPA123-2008-4H69.51
Hordeum-OPAConsensus-2011-4H80.73
Hordeum-OWB-OPA2008-4H71.069
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0310B15
Probe
HAR35_13822
i_11_11513
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_1513
Marker name in barley OPA1 = 11_11513
Original SNP name = ConsensusGBS0589-1
Most representative HarvEST:Barley Assembly #32 Unigene = 4108
Most representative HarvEST:Barley Assembly #35 Unigene = 13822
HarvEST Unigene 35 Probe Set = Contig5861_at; HVSMEb0007M04r2_s_at
Unigene 35 Rice Locus = LOC_Os03g10510
Description for best rice BLAST hit to Unigene 35 member = outer mitochondrial membrane protein porin, putative, expressed; E value = 1E-132
HarvEST Unigene 35 Probe Set = Contig5861_at, HVSMEb0007M04r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein outer mitochondrial membrane protein porin, putative, expressed; E value = 1E-132
BLAST hit in the rice genome = outer mitochondrial membrane protein porin, putative, expressed