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GrainGenes Locus Report: POPA2_0021

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Locus
POPA2_0021  [ Marker Report ]
Type
SNP
Synonym
Other name11_20021
BOPA1_10360-563
BOPA1_11_20021
Synonym11_20021
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H101.1
Hordeum-OPA-2009-1H109.82
Hordeum-OPA123-2008-1H109.82
Hordeum-OPAConsensus-2011-1H111.81
Hordeum-OWB-OPA2008-1H122.11
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0302I08
Probe
HAR35_20144
i_11_20021
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0021
Marker name in barley OPA1 = 11_20021
Original SNP name = 10360-563
Most representative HarvEST:Barley Assembly #32 Unigene = 10360
Most representative HarvEST:Barley Assembly #35 Unigene = 20144
HarvEST Unigene 35 Probe Set = Contig13137_s_at; Contig13138_at
Unigene 35 Rice Locus = LOC_Os05g45720
Description for best rice BLAST hit to Unigene 35 member = glycogen synthase, putative, expressed; E value = 7E-54
Marker name in barley Pilot OPA2 = 2_0021
HarvEST Unigene 35 Probe Set = Contig13137_s_at, Contig13138_at
Description for best rice BLAST hit to Unigene 35 member = protein glycogen synthase, putative, expressed; E value = 7E-54
BLAST hit in the rice genome = glycogen synthase, putative, expressed