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GrainGenes Locus Report: POPA2_0088

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Locus
POPA2_0088  [ Marker Report ]
Type
SNP
Probe
HAR35_5438
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Core-2014_3H144.43
Hordeum-OPA-2009-3H154.31
Hordeum-OPA123-2008-3H154.31
Hordeum-OPAConsensus-2011-3H162.17
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, USDA Core, 2014 Consensus
Sequence
HVVMRXALLhA0486C04
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 2_0088
Most representative HarvEST:Barley Assembly #32 Unigene = 11676
Most representative HarvEST:Barley Assembly #35 Unigene = 5438
HarvEST Unigene 35 Probe Set = Contig14555_s_at
Unigene 35 Rice Locus = LOC_Os01g72100
Description for best rice BLAST hit to Unigene 35 member = polcalcin Jun o 2, putative, expressed; E value = 2E-64
Marker name in barley Pilot OPA2 = 2_0088
Original SNP name = 11676-277
Description for best rice BLAST hit to Unigene 35 member = protein polcalcin Jun o 2, putative, expressed; E value = 2E-64
BLAST hit in the rice genome = polcalcin Jun o 2, putative, expressed

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