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GrainGenes Locus Report: POPA2_0090

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Locus
POPA2_0090  [ Marker Report ]
Type
SNP
Probe
HAR35_14665
Synonym
Synonym12_20090
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H0
Hordeum-OPA123-2008-3H0
Hordeum-OPAConsensus-2011-3H3.97
Hordeum-OWB-OPA2008-3H0
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0541K14
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0090
Marker name in barley OPA1 = 12_20090
Original SNP name = 1173-2131
Most representative HarvEST:Barley Assembly #32 Unigene = 1173
Most representative HarvEST:Barley Assembly #35 Unigene = 14665
HarvEST Unigene 35 Probe Set = Contig272_s_at; Contig622_at; Contig622_s_at; HW04H17u_s_at
Unigene 35 Rice Locus = LOC_Os01g01790
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0
Marker name in barley Pilot OPA2 = 2_0090
Marker name in barley OPA2 = 12_20090
HarvEST Unigene 35 Probe Set = Contig272_s_at, Contig622_at, Contig622_s_at, HW04H17u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0
BLAST hit in the rice genome = expressed protein

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