Query (optional)   in Class  

GrainGenes Locus Report: POPA2_0121

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_0121  [ Marker Report ]
Type
SNP
Synonym
Other name11_20121
BOPA1_11_20121
BOPA1_12492-541
Synonym11_20121
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H72.5
Hordeum-OPA-2009-1H75.45
Hordeum-OPA123-2008-1H75.45
Hordeum-OPAConsensus-2011-1H80.47
Hordeum-OWB-OPA2008-1H82.961
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0229G11
Probe
HAR35_22108
i_11_20121
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0121
Marker name in barley OPA1 = 11_20121
Original SNP name = 12492-541
Most representative HarvEST:Barley Assembly #32 Unigene = 12492
Most representative HarvEST:Barley Assembly #35 Unigene = 22108
HarvEST Unigene 35 Probe Set = Contig15418_at
Unigene 35 Rice Locus = LOC_Os05g41010
Description for best rice BLAST hit to Unigene 35 member = oxidoreductase, putative, expressed; E value = 9E-75
Marker name in barley Pilot OPA2 = 2_0121
Description for best rice BLAST hit to Unigene 35 member = protein oxidoreductase, putative, expressed; E value = 9E-75
BLAST hit in the rice genome = oxidoreductase, putative, expressed