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GrainGenes Locus Report: POPA2_0187

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Locus
POPA2_0187  [ Marker Report ]
Type
SNP
Synonym
Other name12_20187
BOPA2_12_20187
Synonym12_20187
Chromosome
1H
Chromosome Arm
1HL
Map
Barley, 2012 9KSNP 1H97.5
Hordeum-OPA-2009-1H101.45
Hordeum-OPA123-2008-1H101.45
Hordeum-OPAConsensus-2011-1H105.77
Hordeum-OWB-OPA2008-1H112.049
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Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0558G05
Probe
HAR35_14805
i_12_20187
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0187
Marker name in barley OPA1 = 12_20187
Original SNP name = 1498-596
Most representative HarvEST:Barley Assembly #32 Unigene = 1498
Most representative HarvEST:Barley Assembly #35 Unigene = 14805
HarvEST Unigene 35 Probe Set = Contig2193_s_at
Unigene 35 Rice Locus = LOC_Os05g47540
Marker name in barley Pilot OPA2 = 2_0187
Marker name in barley OPA2 = 12_20187
Description for best rice BLAST hit to Unigene 35 member = protein phosphoethanolamine N-methyltransferase, putative, expressed; E value = 8E-44
BLAST hit in the rice genome = phosphoethanolamine N-methyltransferase, putative, expressed