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GrainGenes Locus Report: POPA2_0189

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Locus
POPA2_0189  [ Marker Report ]
Type
SNP
Synonym
Synonym11_20189
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H181.43
Hordeum-OPA123-2008-5H181.43
Hordeum-OPAConsensus-2011-5H172.83
Hordeum-OWB-OPA2008-5H225.842
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Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_22779
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0189
Marker name in barley OPA1 = 11_20189
Original SNP name = 15017-277
Most representative HarvEST:Barley Assembly #32 Unigene = 15017
Most representative HarvEST:Barley Assembly #35 Unigene = 22779
HarvEST Unigene 35 Probe Set = Contig18378_at; Contig18378_s_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA2 = 2_0189
HarvEST Unigene 35 Probe Set = Contig18378_at, Contig18378_s_at