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GrainGenes Locus Report: POPA2_0201

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Locus
POPA2_0201  [ Marker Report ]
Type
SNP
Synonym
Other name12_20201
BOPA2_12_20201
Synonym12_20201
PSR119
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H1.89
Hordeum-OPA123-2008-7H1.89
Hordeum-OPAConsensus-2011-7H2.13
Hordeum-OWB-OPA2008-7H2.174
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0682K04
Probe
HAR35_15004
i_12_20201
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0201
Marker name in barley OPA1 = 12_20201
Original SNP name = 1555-982
Most representative HarvEST:Barley Assembly #32 Unigene = 1555
Most representative HarvEST:Barley Assembly #35 Unigene = 15004
HarvEST Unigene 35 Probe Set = Contig2277_s_at; baak21d06_s_at
Unigene 35 Rice Locus = LOC_Os06g01850
Description for best rice BLAST hit to Unigene 35 member = ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed; E value = 1E-175
Marker name in barley Pilot OPA2 = 2_0201
Marker name in barley OPA2 = 12_20201
HarvEST Unigene 35 Probe Set = Contig2277_s_at, baak21d06_s_at
Description for best rice BLAST hit to Unigene 35 member = protein ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed; E value = 1E-175
BLAST hit in the rice genome = ferredoxin--NADP reductase, leaf isozyme, chloroplast precursor, putative, expressed