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GrainGenes Locus Report: POPA2_0202

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Locus
POPA2_0202  [ Marker Report ]
Type
SNP
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H55.94
Hordeum-OPA123-2008-6H55.94
Hordeum-OWB-OPA2008-6H68.506
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Sequence
HVVMRXALLhA0713F15
Probe
HAR35_14938
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0202
Most representative HarvEST:Barley Assembly #32 Unigene = 1559
Most representative HarvEST:Barley Assembly #35 Unigene = 14938
HarvEST Unigene 35 Probe Set = Contig2284_at
Unigene 35 Rice Locus = LOC_Os05g01820
Description for best rice BLAST hit to Unigene 35 member = cytochrome b5, putative, expressed; E value = 3E-66
Marker name in barley Pilot OPA2 = 2_0202
Original SNP name = 1559-641
Original SNP name = U35_17277_1661
Description for best rice BLAST hit to Unigene 35 member = protein cytochrome b5, putative, expressed; E value = 3E-66
BLAST hit in the rice genome = cytochrome b5, putative, expressed