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GrainGenes Locus Report: POPA2_0211

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Locus
POPA2_0211  [ Marker Report ]
Type
SNP
Synonym
Other name11_20211
BOPA1_11_20211
BOPA1_1597-158
Synonym11_20211
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H116
Hordeum-OPA-2009-6H123.84
Hordeum-OPA123-2008-6H123.84
Hordeum-OPAConsensus-2011-6H133.9
Hordeum-OWB-OPA2008-6H153.187
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0791L13
Probe
HAR35_748
i_11_20211
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0211
Marker name in barley OPA1 = 11_20211
Original SNP name = 1597-158
Most representative HarvEST:Barley Assembly #32 Unigene = 1597
Most representative HarvEST:Barley Assembly #35 Unigene = 748
HarvEST Unigene 35 Probe Set = Contig2358_at; Contig2358_s_at; Contig2360_at
Unigene 35 Rice Locus = LOC_Os02g57280
Description for best rice BLAST hit to Unigene 35 member = CBS domain containing protein, expressed; E value = 7E-80
Marker name in barley Pilot OPA2 = 2_0211
HarvEST Unigene 35 Probe Set = Contig2358_at, Contig2358_s_at, Contig2360_at
Description for best rice BLAST hit to Unigene 35 member = protein CBS domain containing protein, expressed; E value = 7E-80
BLAST hit in the rice genome = CBS domain containing protein, expressed