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GrainGenes Locus Report: POPA2_0355

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Locus
POPA2_0355  [ Marker Report ]
Type
SNP
Synonym
Other name11_20355
BOPA1_11_20355
BOPA1_2389-526
Synonym11_20355
Chromosome
6H
Chromosome Arm
6HL
Map
Hordeum-OPA-2009-6H110.32
Hordeum-OPA123-2008-6H110.32
Hordeum-OPAConsensus-2011-6H120.69
Hordeum-OWB-OPA2008-6H136.309
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0282B24
Probe
HAR35_13865
i_11_20355
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0355
Marker name in barley OPA1 = 11_20355
Original SNP name = 2389-526
Most representative HarvEST:Barley Assembly #32 Unigene = 2389
Most representative HarvEST:Barley Assembly #35 Unigene = 13865
HarvEST Unigene 35 Probe Set = Contig3468_s_at; Contig3469_at
Unigene 35 Rice Locus = LOC_Os02g55640
Description for best rice BLAST hit to Unigene 35 member = proteasome maturation factor UMP1 family protein, expressed; E value = 1E-68
Marker name in barley Pilot OPA2 = 2_0355
HarvEST Unigene 35 Probe Set = Contig3468_s_at, Contig3469_at
Description for best rice BLAST hit to Unigene 35 member = protein proteasome maturation factor UMP1 family protein, expressed; E value = 1E-68
BLAST hit in the rice genome = proteasome maturation factor UMP1 family protein, expressed