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GrainGenes Locus Report: POPA2_0413

[Submit comment/correction][What is a locus?] A genetic locus is a specific position on a chromosome where a gene or genetic marker is located.

Locus
POPA2_0413  [ Marker Report ]
Type
SNP
Probe
HAR35_15255
i_12_20413
Synonym
Other name12_20413
BOPA2_12_20413
Synonym12_20413
BCD22
BCD372
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H127.1
Hordeum-OPA123-2008-3H127.1
Hordeum-OPAConsensus-2011-3H135.43
Hordeum-OWB-OPA2008-3H150.465
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0167C14
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 2_0413
Marker name in barley OPA1 = 12_20413
Original SNP name = 2779-2186
Most representative HarvEST:Barley Assembly #32 Unigene = 2779
Most representative HarvEST:Barley Assembly #35 Unigene = 15255
HarvEST Unigene 35 Probe Set = Contig3978_at; HF01F13w_s_at; rbags11k20_s_at
Unigene 35 Rice Locus = LOC_Os01g65780
Marker name in barley Pilot OPA2 = 2_0413
Marker name in barley OPA2 = 12_20413
Original SNP name = ABC08208_1_646
HarvEST Unigene 35 Probe Set = Contig3978_at, HF01F13w_s_at, rbags11k20_s_at
Description for best rice BLAST hit to Unigene 35 member = protein secondary cell wall-related glycosyltransferase family 8, putative, expressed; E value = 0
BLAST hit in the rice genome = secondary cell wall-related glycosyltransferase family 8, putative, expressed

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